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Courses related to medical imaging

Degree programs
Students at IIT can study medical imaging as part of the degree programs in Electrical Engineering (EE) or Biomedical Engineering (BME).

In EE, a student can choose an emphasis on medical imaging within the M.S. or Ph.D. program. The ECE Department also offers a Professional Master’s degree in Biomedical Imaging and Signals.

The BME program offers a medical imaging track for students at both the B.S. and Ph.D. levels. The following are links to the various degree programs:

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How to apply
Students interested in studying medical imaging at IIT should begin by applying to IIT. Admissions information can be found here.

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Courses related to medical imaging

At IIT, our emphasis is on the engineering and physics behind medical imaging technology. The following courses prepare the student for an engineering career in medical imaging, or for medical school with a specialization in radiology.

ECE 437 Digital Signal Processing I 
Digital Signal Processing I Prerequisites: ECE 308. Discrete-time system analysis, discrete convolution and correlation, Z-transforms. Realization and frequency response of discrete-time systems, properties of analog filters, IIR filter design, FIR filter design. Discrete Fourier Transforms. Applications of digital signal processing. Credit will be given for either ECE 436 or ECE 437, but not for both. (3-0-3) (P)

ECE 475 Random Phenomena in EE 
Random Phenomena in Electrical Engineering Prerequisites: ECE 308. Basic axioms of probability. Signals as random variables. Distribution and density functions. Functions of random variables. Applications to the binary symmetric communication channel, square-law and other nonlinear devices. The Gaussian, Poisson, and other distributions. Application to photon counting. The signal-plus-noise problem. The DC and AC value of signals: mean and variances. The meaning of signal-to-noise ratio. Higher moments. Estimation of the mean and the variance. Confidence intervals. Credit will be given for either ECE 475 or MATH 475, but not for both. (3-0-3)

ECE 481 Image Processing 
Image Processing Prerequisites: ECE 436 or ECE 437. Corequisites: ECE 475 or MATH 475. Mathematical foundations of image processing, including two-dimensional discrete Fourier transforms, circulant and block-circulant matrices. Digital representation of images and basic color theory. Fundamentals and applications of image enhancement, restoration, reconstruction, compression, and recognition. (3-0-3) (P)

BME 500 Introduction to Biomedical Engineering
Introduction to the concepts and research in biomedical engineering. Provides an overview of current biomedical engineering research areas, emphasis on application of an engineering approach to medicine and physiology.

BME 501 Biomedical Instrumentation
Bioelectric phenomena, transducers, amplifiers. Processing of ECG, EMG and EEG signals.

ECE 511 Analysis Random Signals 
Prerequisites: ECE 308 and ECE 475 or MATH 475 Probability theory, including discrete and continuous random variables, functions and transformations of random variables. Random processes, including correlation and spectral analysis, the Gaussian process and the response of linear systems to random processes. (3-0-3)

BME 530 Inverse Problems in Biomedical Imaging
This course will introduce graduate students to the mathematical theory of inverse problems. Concepts from functional analysis will be applied for understanding and characterizing mathematical properties of inverse problems. This will permit for the analysis of the stability and resolution of image reconstruction algorithms for various existing and novel biomedical imaging systems. The singular value decomposition (SVD) is introduced and applied for understanding fundamental properties of imaging systems and reconstruction algorithms.

ECE 531 Linear System Theory 
Prerequisites: ECE 308 Linear spaces and operators, single and multivariable continuous dynamical systems, controllability and observability. Canonical forms, irreducible realizations. Synthesis of compensators and observers. Composite systems, elements of stability. (3-0-3)

BME 532 Medical Imaging Science
This course is an introduction to basic concepts in medical imaging, such as: receiver operating characteristics, the rose model, point spread function and transfer function, covariance and autocovariance, noise, filters, sampling, aliasing, interpolation, and image registration.

BME 533 Biostatistics
This course is designed to cover the tools and techniques of modern statistics with specific applications to biomedical and clinical research. Both parametric and nonparametric analysis will be presented. Descriptive statistics will be discussed although emphasis is on inferential statistics and experimental design.

BME 535 Magnetic Resonance Imaging
This course is an introduction to magnetic resonance imaging (MRI). It includes basic MR physics, the principles of selective excitation, signal detection, and MR image reconstruction, different pulse sequences, MRI hardware, issues on image quality and artifacts, and advanced MRI techniques.

BME 538 Neuroimaging
This course describes the use of different imgaging modalities to study brain function and connectivity. The first part of the course deals with brain function. It includes an introduction to energy metabolism in the brain, cerebral blood flow, and brain activation. It continues with an introduction to magnetic resonance imaging (MRI), perfusion-based fMRI, BOLD fMRI, fMRI paradigm design and statistical analysis, introduction to positron emission tomography (PET) and studying brain function with PET, introduction to magnetoencephalography (MEG) and studying brain function with MEG. The second part of the course deals with brain connectivity. It includes an introduction to diffusion tensor MRI, explanation of the relationship between the diffusion properties of tissue its structural characteristics, and white matter fiber tractography techniques.

BME 540 Wave Physics and Applied Optics for Imaging Scientists
This course will introduce students to fundamental concepts in wave physics and the analysis of optical wavefields. These principles will be utilized for understanding existing and novel imaging methods that employ coherent radiation. Solutions to inverse scattering and inverse source problems will be derived and algorithmic realizations of the solutions will be developed. Phase-contrast imaging techniques and X-ray imaging systems that employ coherent radiation will be studied.

BME 542 Advanced Concepts in Image Science
This course will introduce students to advanced concepts in theoretical image science. The topics covered will include deterministic descriptions of imaging systems, stochastic descriptions of objects and images, statistical decision theory, object assessment of image quality, and numerical model observers.

ECE 565 Computer Vision & Image Processing
Prerequisites: ECE 437, ECE 475 or MATH 475 Multidimensional sampling and discrete Fourier transform; Image segmentation; Object boundary (edge) detection and description; shape representation and extraction; Matching and recognition; Image registration; Camera geometry and stereo imaging; Morphological processing; Motion detection and compensation; Image modeling and transforms; Inverse problems in image processing (restoration and reconstruction). (3-0-3)

ECE 566 Statistical Pattern Recognition
Prerequisites: ECE 511 Introduction to machine-learning approaches, starting with fundamentals, such as principal component analysis, up through modern kernel methods, such as support vector machines. Statistical resampling, clustering, regression and classification. (3-0-3)

ECE 567 Statistical Signal Processing 
STATISTICAL SIGNAL PROCESSING Prerequisites: ECE 511 and MATH 333 Detection theory and hypothesis testing. Introduction to estimation theory. Properites of estimators, Gauss-Markov theorem. Estimation of random variables: conditional mean estimates, linear minimum mean-square estimation, orthogonality principle, Wiener and Kalman filters. Adaptive filtering. LMS algorithm: properties and applications. (3-0-3)

ECE 569 Digital Signal Processing II 
DIGITAL SIGNAL PROCESSING II Prerequisites: ECE 437 and ECE 475 or MATH 475 Review of basic DSP theory. Design of digital filters: FIR, IIR, frequency-transformation methods, optimal methods. Discrete Fourier Transofrm (DFT) and Fast Fourier Transform algorithms. Spectral estimation techniques, clasical and parametric techniques. AR, MA, ARMA models. Estimation algorithms. Levinson, Durbin-Levinson and Burg's algorithms. Eigenanalysis algorithms for spectral estimation. (3-0-3)

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